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  "_topics": [
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    "pedigree-reconstruction",
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    "CalcBYprobs",
    "CalcMaxMismatch",
    "CalcOHLLR",
    "CalcPairLL",
    "CalcParentProbs",
    "CalcRped",
    "CheckGeno",
    "ComparePairs",
    "CountOH",
    "DyadCompare",
    "Err_RADseq",
    "ErrToM",
    "EstConf",
    "FindFamilies",
    "GenoConvert",
    "GetAncestors",
    "getAssignCat",
    "GetDescendants",
    "getGenerations",
    "GetLLRAge",
    "GetMaybeRel",
    "GetRelM",
    "LHConvert",
    "LLtoProb",
    "MakeAgePrior",
    "MkGenoErrors",
    "PedCompare",
    "PedPolish",
    "PedStripFID",
    "PlotAgePrior",
    "PlotPairLL",
    "PlotPedComp",
    "PlotPropAssigned",
    "PlotRelPairs",
    "PlotSeqSum",
    "sequoia",
    "SimGeno",
    "SnpStats",
    "SummarySeq",
    "writeColumns",
    "writeSeq"
  ],
  "_datasets": [
    {
      "name": "Conf_griffin",
      "title": "Example output from estimating confidence probabilities: griffins",
      "object": "Conf_griffin",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "FieldMums_griffin",
      "title": "Example field-observed mothers: griffins",
      "object": "FieldMums_griffin",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "mum"
      ],
      "rows": 143,
      "table": true,
      "tojson": true
    },
    {
      "name": "Geno_griffin",
      "title": "Example genotype file: Griffins",
      "object": "Geno_griffin",
      "class": [
        "matrix",
        "array"
      ],
      "fields": {},
      "rows": 142,
      "table": true,
      "tojson": true
    },
    {
      "name": "Geno_HSg5",
      "title": "Example genotype file: 'HSg5'",
      "object": "Geno_HSg5",
      "class": [
        "matrix",
        "array"
      ],
      "fields": {},
      "rows": 920,
      "table": true,
      "tojson": true
    },
    {
      "name": "Inherit_patterns",
      "title": "Inheritance patterns",
      "object": "Inherit_patterns",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "LH_griffin",
      "title": "Example life history data: griffins",
      "object": "LH_griffin",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ID",
        "Sex",
        "BirthYear"
      ],
      "rows": 200,
      "table": true,
      "tojson": true
    },
    {
      "name": "LH_HSg5",
      "title": "Example life history file: 'HSg5'",
      "object": "LH_HSg5",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ID",
        "Sex",
        "BirthYear"
      ],
      "rows": 1000,
      "table": true,
      "tojson": true
    },
    {
      "name": "MaybeRel_griffin",
      "title": "Example output from check for relatives: griffins",
      "object": "MaybeRel_griffin",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "Ped_griffin",
      "title": "Example pedigree: griffins",
      "object": "Ped_griffin",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "dam",
        "sire",
        "birthyear"
      ],
      "rows": 200,
      "table": true,
      "tojson": true
    },
    {
      "name": "Ped_HSg5",
      "title": "Example pedigree: 'HSg5'",
      "object": "Ped_HSg5",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "dam",
        "sire"
      ],
      "rows": 1000,
      "table": true,
      "tojson": true
    },
    {
      "name": "SeqOUT_griffin",
      "title": "Example output from pedigree inference: griffins",
      "object": "SeqOUT_griffin",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "SeqOUT_HSg5",
      "title": "Example output from pedigree inference: 'HSg5'",
      "object": "SeqOUT_HSg5",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "SimGeno_example",
      "title": "Example genotype file: 'HSg5'",
      "object": "SimGeno_example",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12",
        "V13",
        "V14",
        "V15",
        "V16",
        "V17",
        "V18",
        "V19",
        "V20",
        "V21",
        "V22",
        "V23",
        "V24",
        "V25",
        "V26",
        "V27",
        "V28",
        "V29",
        "V30",
        "V31",
        "V32",
        "V33",
        "V34",
        "V35",
        "V36",
        "V37",
        "V38",
        "V39",
        "V40",
        "V41",
        "V42",
        "V43",
        "V44",
        "V45",
        "V46",
        "V47",
        "V48",
        "V49",
        "V50",
        "V51",
        "V52",
        "V53",
        "V54",
        "V55",
        "V56",
        "V57",
        "V58",
        "V59",
        "V60",
        "V61",
        "V62",
        "V63",
        "V64",
        "V65",
        "V66",
        "V67",
        "V68",
        "V69",
        "V70",
        "V71",
        "V72",
        "V73",
        "V74",
        "V75",
        "V76",
        "V77",
        "V78",
        "V79",
        "V80",
        "V81",
        "V82",
        "V83",
        "V84",
        "V85",
        "V86",
        "V87",
        "V88",
        "V89",
        "V90",
        "V91",
        "V92",
        "V93",
        "V94",
        "V95",
        "V96",
        "V97",
        "V98",
        "V99",
        "V100",
        "V101",
        "V102",
        "V103",
        "V104",
        "V105",
        "V106",
        "V107",
        "V108",
        "V109",
        "V110",
        "V111",
        "V112",
        "V113",
        "V114",
        "V115",
        "V116",
        "V117",
        "V118",
        "V119",
        "V120",
        "V121",
        "V122",
        "V123",
        "V124",
        "V125",
        "V126",
        "V127",
        "V128",
        "V129",
        "V130",
        "V131",
        "V132",
        "V133",
        "V134",
        "V135",
        "V136",
        "V137",
        "V138",
        "V139",
        "V140",
        "V141",
        "V142",
        "V143",
        "V144",
        "V145",
        "V146",
        "V147",
        "V148",
        "V149",
        "V150",
        "V151",
        "V152",
        "V153",
        "V154",
        "V155",
        "V156",
        "V157",
        "V158",
        "V159",
        "V160",
        "V161",
        "V162",
        "V163",
        "V164",
        "V165",
        "V166",
        "V167",
        "V168",
        "V169",
        "V170",
        "V171",
        "V172",
        "V173",
        "V174",
        "V175",
        "V176",
        "V177",
        "V178",
        "V179",
        "V180",
        "V181",
        "V182",
        "V183",
        "V184",
        "V185",
        "V186",
        "V187",
        "V188",
        "V189",
        "V190",
        "V191",
        "V192",
        "V193",
        "V194",
        "V195",
        "V196",
        "V197",
        "V198",
        "V199",
        "V200",
        "V201"
      ],
      "rows": 214,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "CalcBYprobs",
      "title": "Birth year probabilities",
      "topics": [
        "CalcBYprobs"
      ]
    },
    {
      "page": "CalcMaxMismatch",
      "title": "Maximum Number of Mismatches",
      "topics": [
        "CalcMaxMismatch"
      ]
    },
    {
      "page": "CalcOHLLR",
      "title": "Calculate OH and LLR for a pedigree",
      "topics": [
        "CalcOHLLR"
      ]
    },
    {
      "page": "CalcPairLL",
      "title": "Calculate Likelihoods for Alternative Relationships",
      "topics": [
        "CalcPairLL"
      ]
    },
    {
      "page": "CalcParentProbs",
      "title": "Calculate assignment probabilities",
      "topics": [
        "CalcParentProbs"
      ]
    },
    {
      "page": "CalcRped",
      "title": "Calculate Pedigree Relatedness",
      "topics": [
        "CalcRped"
      ]
    },
    {
      "page": "CheckGeno",
      "title": "Check Genotype Matrix",
      "topics": [
        "CheckGeno"
      ]
    },
    {
      "page": "ComparePairs",
      "title": "Compare Pairwise Relationships",
      "topics": [
        "ComparePairs"
      ]
    },
    {
      "page": "Conf_griffin",
      "title": "Example output from estimating confidence probabilities: griffins",
      "topics": [
        "Conf_griffin"
      ]
    },
    {
      "page": "CountOH",
      "title": "Count opposing homozygous SNPs between pairs of individuals",
      "topics": [
        "CountOH"
      ]
    },
    {
      "page": "DyadCompare",
      "title": "Compare Dyads (DEPRECATED)",
      "topics": [
        "DyadCompare"
      ]
    },
    {
      "page": "Err_RADseq",
      "title": "Convert Genotyping Error Rates from per-allele to per-locus",
      "topics": [
        "Err_RADseq"
      ]
    },
    {
      "page": "ErrToM",
      "title": "Generate Genotyping Error Matrix",
      "topics": [
        "ErrToM"
      ]
    },
    {
      "page": "EstConf",
      "title": "Confidence Probabilities",
      "topics": [
        "EstConf"
      ]
    },
    {
      "page": "EstEr",
      "title": "Estimate genotyping error rate (REMOVED; will be re-implemented)",
      "topics": [
        "EstEr"
      ]
    },
    {
      "page": "FieldMums_griffin",
      "title": "Example field-observed mothers: griffins",
      "topics": [
        "FieldMums_griffin"
      ]
    },
    {
      "page": "FindFamilies",
      "title": "Assign Family IDs",
      "topics": [
        "FindFamilies"
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      "title": "Example life history file: 'HSg5'",
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      "title": "Simulate Genotyping Errors",
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      "title": "Example pedigree: griffins",
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      "title": "Example pedigree: 'HSg5'",
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